RetrogeneDB ID: | retro_cpor_684 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_23:16732612..16732996(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.91 % |
Parental protein coverage: | 67.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RKELATVRTICSHVQNMIKGVTLGF-RYKMRSVYA-HFPINVVIQENGSLVE-IRNFLGEKYIRRVRMRA |
R.ELA.V.TICSHV.NMIKGVTLGF...KMRSV.....P....I...G.L...IRNFLG.KYI....MRA | |
Retrocopy | RQELAVVHTICSHVENMIKGVTLGF<LLKMRSVCS<TSPSMLSIRRMGLLLK<IRNFLGGKYICWDYMRA |
Parental | VGVACSVSQAQKDELILEGNDIELVSNSVAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPDE |
.G.ACSV.Q.Q.DELILEGN.IELVSNS.AAL.QQATTVKNKDI.K..DGIYVSEKG...Q.DE | |
Retrocopy | -GIACSVCQTQRDELILEGNHIELVSNS-AALSQQATTVKNKDIGKIWDGIYVSEKGAI*QLDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .10 RPM | 197 .34 RPM |
SRP017611_liver | 0 .09 RPM | 143 .12 RPM |
SRP040447_lung | 0 .00 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 206 .16 RPM |