RetrogeneDB ID: | retro_itri_908 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393341.1:2515668..2516238(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSSTOG00000002077 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 84.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATV |
MKTILSNQTV.IPENV..TL.G.TVIVKGPRGTL.RDFNHI.VELSLLGKK..RLRVDKWWGNRKEL..V | |
Retrocopy | MKTILSNQTVHIPENVNSTLMGCTVIVKGPRGTLWRDFNHISVELSLLGKK--RLRVDKWWGNRKELVIV |
Parental | RTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQ |
.T.CSHVQNMIKGV.LGF.YKMRSVY.HFPINVVI.EN.SLV.I.NFLGEKYI.RV.MRTGVACSVSQAQ | |
Retrocopy | NTNCSHVQNMIKGVVLGFCYKMRSVYVHFPINVVIRENRSLVKI*NFLGEKYICRVQMRTGVACSVSQAQ |
Parental | KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE |
KDELILEGNDI.LVSNS..LIQ.A.TVKNKDIRKFLDGIYVSEK..VQQ.DE | |
Retrocopy | KDELILEGNDIKLVSNSTTLIQ*AETVKNKDIRKFLDGIYVSEK*RVQQPDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |