RetrogeneDB ID: | retro_itri_956 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393349.1:4660937..4661225(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSSTOG00000002077 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 55.1 % |
Parental protein coverage: | 51.04 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | YKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAA |
.K.R.VY.H.PI....QE.G....IR.F..E.Y..RV.MR.GVA.S.S.AQ.DEL.L.GND....S...A | |
Retrocopy | HKTRAVYVHIPIYFIAQEDGPSA-IRKFPNEIYSYRVQMRPGVA*SIS*AQEDELVLKGND-NFFSSWVA |
Parental | LIQQATTVKNKDIRKFLDGIYVSEKGTV |
LIQQA..VK.KDIRK....I.VSEK.TV | |
Retrocopy | LIQQARAVKIKDIRKCFTVIFVSEKETV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |