RetrogeneDB ID: | retro_itri_838 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393331.1:8885839..8886289(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSSTOG00000002077 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 79.61 % |
Parental protein coverage: | 76.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MKTILSNQTVDIPENV---DITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL |
M.T.LS..T.DIPENV...DITLKGRTVIVKGPRG.L.RDF.HI.VELSLLGKK.KRLRVDKWWGNR.EL | |
Retrocopy | MNTVLSSHTLDIPENVHIPDITLKGRTVIVKGPRGALWRDFSHIHVELSLLGKKRKRLRVDKWWGNRREL |
Parental | ATVRTICSHVQNMIK-GVTLGFRYKMRSVYAHFPINVVIQENGSL-VEIRNFLGEKYIRRVRMRTGVACS |
ATVR.IC.HV.NMI..GVTLGF..KMR.VY...PINVVIQENGSL.VEI.NFL.EKYI.RV.MRTGVACS | |
Retrocopy | ATVRVICGHVENMIR<GVTLGFH*KMRNVYTYIPINVVIQENGSL>VEI*NFLDEKYICRVWMRTGVACS |
Parental | VSQAQKDELILE |
VSQAQKDELI.E | |
Retrocopy | VSQAQKDELIIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |