RetrogeneDB ID: | retro_cpor_472 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_16:31725613..31725946(-) | ||
Located in intron of: | ENSCPOG00000014854 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.78 % |
Parental protein coverage: | 59.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DKWWGNRKELATVRTICSHVQNMIKGVTL-GFRYKMRSVYAHFPINVVIQEN-GSLVEIR-NFLGEKYIR |
.K.WG.R.ELA.V..I..HVQN.IK.V.L.G..YKM.S.YAHF.I...IQEN.G.L...R......KY.. | |
Retrocopy | NK*WGDRNELA-VGMISRHVQNIIKDVRL<GLCYKMWSSYAHFSISIIIQEN>GLLLKFRLS*VKNKYAG |
Parental | RVRMRAVGVACSVSQAQKDELILEGNDIELVSNSVAALIQQATTVKNK |
.VR....GVA..V.QAQ.DELIL..NDIELVS.S...LIQQ.T.VKNK | |
Retrocopy | CVR---AGVAYVVFQAQNDELILKENDIELVSYS-PVLIQQGTAVKNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .10 RPM | 197 .34 RPM |
SRP017611_liver | 0 .00 RPM | 143 .12 RPM |
SRP040447_lung | 0 .00 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 206 .16 RPM |