RetrogeneDB ID: | retro_itri_588 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393304.1:5896644..5896933(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL9 | ||
Ensembl ID: | ENSSTOG00000002077 | ||
Aliases: | None | ||
Description: | ribosomal protein L9 [Source:HGNC Symbol;Acc:10369] |
Percent Identity: | 56.57 % |
Parental protein coverage: | 50.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RSVYAHFPINVVIQENGSLVEIR-NFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALI |
RSV.AHFPI.VVIQE.G.LV....N....KYI.....R.GVA.S.SQ.Q..EL..E.NDIE.V.NSAALI | |
Retrocopy | RSVCAHFPIKVVIQETGPLVDFE<NSMSDKYIFKNWIRLGVAHSGSQVQ*GELLHERNDIEHVLNSAALI |
Parental | QQATTVKN-KDIRKFLDGIYVSEKGTVQQ |
QQA.TV...K.IRK..D.IY.S.K..... | |
Retrocopy | QQAITVNK<KNIRKLWDSIYLSPKRLINR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |