RetrogeneDB ID: | retro_dnov_1951 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_38402:5126..5616(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSDNOG00000000421 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 62.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MHRDSCPLDCK-VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNLPGFAFVXXXXXXXAADAVRELD-K |
MH.DSCPLDCK.VYVGNLGNNGNKTELE.AF....PLR.VWVARN.PGFAFV.......AADAV.ELD.. | |
Retrocopy | MHCDSCPLDCK>VYVGNLGNNGNKTELEQAFCNNRPLRRVWVARNPPGFAFVKFGDPRDAADAVQELDGR |
Parental | TLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRRRSPPPRRXXXXXXXXXXXXXXSLSRDRRRERS |
T.CGC.VRVELSNG.....RN..P.PSWG..P.D.Y.RR..PP................SLSR.RRRER. | |
Retrocopy | TFCGCPVRVELSNG>XXXXRNCPP-PSWGHHPQDEYHRRHSPPCCISPRKRSFSCSWSRSLSRNRRRERT |
Parental | LSRERNHKPS-RSFSRSRSRSRSNERK |
L..ERNHK.S..SFSRS.S.SR.NERK | |
Retrocopy | LF*ERNHKQS<HSFSRS*SCSR*NERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 82 .84 RPM |
SRP012922_cerebellum | 0 .00 RPM | 33 .68 RPM |
SRP012922_heart | 0 .00 RPM | 20 .65 RPM |
SRP012922_kidney | 0 .00 RPM | 19 .44 RPM |
SRP012922_liver | 0 .00 RPM | 28 .79 RPM |
SRP012922_lung | 0 .00 RPM | 58 .49 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 11 .08 RPM |
SRP012922_spleen | 0 .00 RPM | 74 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000421 | 9 retrocopies |
retro_dnov_1326, retro_dnov_1513, retro_dnov_1702, retro_dnov_1951 , retro_dnov_2153, retro_dnov_2328, retro_dnov_2491, retro_dnov_569, retro_dnov_784,
|
Dasypus novemcinctus | ENSDNOG00000007821 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Equus caballus | ENSECAG00000018741 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000017186 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006684 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018106 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies |