RetrogeneDB ID:

retro_ogar_1959

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873577.1:6044156..6044647(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000031092
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000000502
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1959
ATGCATCATGATTCCTGTCCATTGGACTGTAAGGTTTATGTAGGTAATCTTGGAAACAATGGCAATAAGACTGAATTGGA
AGGGGCTTTTGGCTATTATGGACCACTCCGAAGCGTGTGGGTTGCTAGAAACCCTCCCGGCTTTGCTTTTGTTGAATTTG
AAGATCCTCGAGATGCAGCCGATGCTGTCCGAGAGCTAGATGGAAGGACACTGTGGGGCTGCCGTGGGAGAGTGGAACTG
TCCGATGGTGAAAAGAGAAGTAGAAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAG
GAGTCCTCCACCTCGCCGCAGATCTCCAAGGAGGAGAAGCTTCTCTGGCAGCCGGAGCAGGTCCCTTTCCCGAGATAGAA
GAGAGAGAGATCATTGTCTCGGGAGAGAAATCATAAGCCCTCCCGATCCTTCTCTAGGTCTCGAAGCCGATCTAGGTCGA
ATGAAAGGAAA

ORF - retro_ogar_1959 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.76 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
MH.DSCPLDCKVYVGNLGNNGNKTELE.AFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
RetrocopyMHHDSCPLDCKVYVGNLGNNGNKTELEGAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
ParentalLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRR-RERSL
L.GCR.RVELS.GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFS.SRSRSLSRDRR.RERSL
RetrocopyLWGCRGRVELSDGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSGSRSRSLSRDRR<RERSL
ParentalSRERNHKPSRSFSRSRSRSRSNERK
SRERNHKPSRSFSRSRSRSRSNERK
RetrocopySRERNHKPSRSFSRSRSRSRSNERK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1959 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 112 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000400065 retrocopies
Callithrix jacchus ENSCJAG000000160625 retrocopies
Dasypus novemcinctus ENSDNOG000000004219 retrocopies
Equus caballus ENSECAG000000187412 retrocopies
Echinops telfairi ENSETEG000000101172 retrocopies
Homo sapiens ENSG000001120814 retrocopies
Gorilla gorilla ENSGGOG000000171865 retrocopies
Loxodonta africana ENSLAFG000000181932 retrocopies
Microcebus murinus ENSMICG000000046745 retrocopies
Myotis lucifugus ENSMLUG000000106716 retrocopies
Macaca mulatta ENSMMUG000000143064 retrocopies
Mustela putorius furoENSMPUG000000142151 retrocopy
Mus musculus ENSMUSG000000711729 retrocopies
Oryctolagus cuniculus ENSOCUG000000066843 retrocopies
Otolemur garnettii ENSOGAG00000000502 6 retrocopies
Otolemur garnettii ENSOGAG000000038521 retrocopy
Otolemur garnettii ENSOGAG000000101692 retrocopies
Otolemur garnettii ENSOGAG000000155151 retrocopy
Otolemur garnettii ENSOGAG000000259501 retrocopy
Ochotona princeps ENSOPRG000000060063 retrocopies
Pan troglodytes ENSPTRG000000181064 retrocopies
Rattus norvegicus ENSRNOG0000000052011 retrocopies
Sus scrofa ENSSSCG000000015641 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000142805 retrocopies
Tarsius syrichta ENSTSYG000000134983 retrocopies
Tursiops truncatus ENSTTRG0000001344711 retrocopies
Vicugna pacos ENSVPAG000000054811 retrocopy



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