RetrogeneDB ID: | retro_mmus_100 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:98625053..98625545(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000078134 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSMUSG00000071172 | ||
Aliases: | Srsf3, AL024116, Sfrs3, X16 | ||
Description: | serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285] |
Percent Identity: | 95.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MHRDSC.LDCKVYVGNLGNNGNKTELE.AFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT | |
Retrocopy | MHRDSC-LDCKVYVGNLGNNGNKTELEWAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS |
LCGCRVRVELSNGEKRSRNRG.PPSWGRRPRDD.RRRSPPPR.RSPRR.SFSRSRSRSLSRDRRRERSLS | |
Retrocopy | LCGCRVRVELSNGEKRSRNRGLPPSWGRRPRDDDRRRSPPPRCRSPRRKSFSRSRSRSLSRDRRRERSLS |
Parental | RERNHKPSRSFSRSRSRSRSNERK |
RERNHKPSRSFSRS.SRSRSNERK | |
Retrocopy | RERNHKPSRSFSRSHSRSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 70 .09 RPM |
SRP007412_cerebellum | 0 .04 RPM | 64 .83 RPM |
SRP007412_heart | 0 .09 RPM | 53 .05 RPM |
SRP007412_kidney | 0 .08 RPM | 57 .23 RPM |
SRP007412_liver | 0 .05 RPM | 20 .86 RPM |
SRP007412_testis | 0 .09 RPM | 39 .61 RPM |