RetrogeneDB ID: | retro_mmus_3629 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:62835511..62835781(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082620 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSMUSG00000071172 | ||
Aliases: | Srsf3, AL024116, Sfrs3, X16 | ||
Description: | serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285] |
Percent Identity: | 67.03 % |
Parental protein coverage: | 54.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RVRVELSNGEKRSRNRGPPPSWGRRP-RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRER |
..R.ELSNG.KRS.N.GPPPSWG..P.RDDY.R..PP...RSPRRRSFS.S.SRS.SRD.RRE.SLS.E. | |
Retrocopy | KIRLELSNGGKRSLNLGPPPSWGHLPPRDDYCR-IPPDQSRSPRRRSFS*SHSRSFSRDKRRESSLSGEK |
Parental | NHKPSRSFSRSRSRSRSNERK |
.HK.S.SFSR..S.S.SN.RK | |
Retrocopy | IHKLSLSFSRFHSLSWSN*RK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 70 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .83 RPM |
SRP007412_heart | 0 .00 RPM | 53 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .23 RPM |
SRP007412_liver | 0 .00 RPM | 20 .86 RPM |
SRP007412_testis | 0 .00 RPM | 39 .61 RPM |