Parental gene: | Srsf3, ENSMUSG00000071172 |
| Aliases: | Srsf3, AL024116, Sfrs3, X16 |
| Description: | serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 17:29032672..29043366(+) |
>ENSMUSG00000071172
ATGCATCGTGATTCCTGTCCCTTGGATTGTAAGGTTTATGTAGGTAATCTTGGAAATAATGGAAACAAGACTGAATTAGA
ACGGGCTTTTGGCTATTATGGACCACTCAGAAGTGTGTGGGTTGCTCGAAACCCTCCTGGCTTTGCTTTCGTCGAATTTG
AGGATCCCCGAGATGCTGCTGATGCTGTCCGGGAACTAGATGGAAGAACACTGTGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAGAGAAGTCGGAATCGTGGGCCGCCTCCCTCTTGGGGTCGTCGTCCTCGAGATGATTACCGCAGGAG
GAGTCCTCCACCTCGGCGCAGATCCCCAAGAAGGAGAAGCTTTTCCCGAAGCCGGAGCAGGTCACTTTCTAGAGATAGGA
GAAGAGAAAGGTCTCTGTCTCGTGAGAGAAATCACAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAATAG
ATGCATCGTGATTCCTGTCCCTTGGATTGTAAGGTTTATGTAGGTAATCTTGGAAATAATGGAAACAAGACTGAATTAGA
ACGGGCTTTTGGCTATTATGGACCACTCAGAAGTGTGTGGGTTGCTCGAAACCCTCCTGGCTTTGCTTTCGTCGAATTTG
AGGATCCCCGAGATGCTGCTGATGCTGTCCGGGAACTAGATGGAAGAACACTGTGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAGAGAAGTCGGAATCGTGGGCCGCCTCCCTCTTGGGGTCGTCGTCCTCGAGATGATTACCGCAGGAG
GAGTCCTCCACCTCGGCGCAGATCCCCAAGAAGGAGAAGCTTTTCCCGAAGCCGGAGCAGGTCACTTTCTAGAGATAGGA
GAAGAGAAAGGTCTCTGTCTCGTGAGAGAAATCACAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 70 .09 RPM |
| SRP007412_cerebellum | 64 .83 RPM |
| SRP007412_heart | 53 .05 RPM |
| SRP007412_kidney | 57 .23 RPM |
| SRP007412_liver | 20 .86 RPM |
| SRP007412_testis | 39 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000040006 | ortholog_one2one | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016062 | ortholog_one2many | 5 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000000421 | possible_ortholog | 9 retrogenes | |
| Equus caballus | ENSECAG00000018741 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000010117 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000112081 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000017186 | possible_ortholog | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000018193 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000004674 | ortholog_one2one | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010671 | ortholog_one2many | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000014306 | possible_ortholog | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014215 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021134 | other_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000024097 | within_species_paralog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006684 | possible_ortholog | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000502 | possible_ortholog | 6 retrogenes | |
| Ochotona princeps | ENSOPRG00000006006 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000018106 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000520 | ortholog_one2one | 11 retrogenes | |
| Sus scrofa | ENSSSCG00000001564 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014280 | ortholog_one2one | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000013498 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013447 | ortholog_one2one | 11 retrogenes | |
| Vicugna pacos | ENSVPAG00000005481 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_100 | 95.73 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1347 | 90.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1749 | 96.97 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_2294 | 98.78 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_2337 | 86.17 | 56.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_2433 | 65.14 | 65.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmus_2654 | 64.66 | 69.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_mmus_2933 | 70.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_mmus_3629 | 67.03 | 54.88 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000071172 retrocopies