RetrogeneDB ID: | retro_ecab_961 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 7:74868072..74868545(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSECAG00000018741 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 69.14 % |
Parental protein coverage: | 98.17 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
.H.DSCPLDCKVY.GNLGNNGNKTELERAF..YG.LRSVWVARNPP.FAFVEF.DP.D.ADAV.ELD.R. | |
Retrocopy | VHHDSCPLDCKVYTGNLGNNGNKTELERAFVCYGQLRSVWVARNPPAFAFVEF*DPLDEADAV*ELD*RA |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRD-DYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSL |
.CGCRVRV.L.N.EK.S.NR.PPPSW...P.D...R...P..RRRSPR.RS.SRSR.RSL........S. | |
Retrocopy | ICGCRVRVVLWNDEK-SQNRSPPPSWSHHPQD<QWRSPPP--RRRSPRQRSLSRSRNRSLXXXXXXXXSP |
Parental | SRERNHKPSRSFSRSRSRSRSN |
S..RNHKPS.SFSRS.S..RSN | |
Retrocopy | SQKRNHKPSLSFSRSHS*PRSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 8 .85 RPM |
SRP021940_cerebellum | 0 .00 RPM | 14 .13 RPM |
SRP021940_embryo | 0 .00 RPM | 23 .60 RPM |
SRP021940_placental_villous | 0 .00 RPM | 12 .08 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 12 .05 RPM |
SRP021940_testis | 0 .00 RPM | 16 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000421 | 9 retrocopies | |
Equus caballus | ENSECAG00000018741 | 2 retrocopies |
retro_ecab_178, retro_ecab_961 ,
|
Gorilla gorilla | ENSGGOG00000017186 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006684 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000018106 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies |