RetrogeneDB ID:

retro_ggor_2030

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:60291615..60292107(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000024859
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:SRSF3
Ensembl ID:ENSGGOG00000017186
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2030
ATGCATCGTGATTCCTGTCCATTGGACTGTAAGGTTTATGTAGGCAATCTTGGAAACAATGGCAACAAGACCGAATTGGA
ACGGGCTTTTGGCTACTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCACCCGGCTTTGCTTTTGTTGAATTTG
AAGATCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAAGAACACTATGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAAAGAAGTAGAAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAG
GAGTCCTCCACCTCGTCGCAGATCTCCAAGAAGGAGAAGCTTCTCTCGCAGCCGGAGCAGGTCCCTTTCTAGAGATAGGA
GAAGAGAGAGATCGCTGTCTCGTGAGAGAAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGTCGATCTAGGTCA
AATGAAAGGAAA

ORF - retro_ggor_2030 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
RetrocopyMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
ParentalLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS
LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS
RetrocopyLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS
ParentalRERNHKPSRSFSRSRSRSRSNERK
RERNHKPSRSFSRSRSRSRSNERK
RetrocopyRERNHKPSRSFSRSRSRSRSNERK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 4 .22 RPM 24 .50 RPM
SRP007412_cerebellum 3 .66 RPM 30 .97 RPM
SRP007412_heart 1 .91 RPM 12 .48 RPM
SRP007412_kidney 2 .62 RPM 49 .15 RPM
SRP007412_liver 1 .87 RPM 43 .37 RPM
SRP007412_testis 8 .81 RPM 52 .84 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2030 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2030 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 13 parental genes, and 58 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000160625 retrocopies
Dasypus novemcinctus ENSDNOG000000004219 retrocopies
Equus caballus ENSECAG000000187412 retrocopies
Gorilla gorilla ENSGGOG000000098081 retrocopy
Gorilla gorilla ENSGGOG00000017186 5 retrocopies
Loxodonta africana ENSLAFG000000181932 retrocopies
Myotis lucifugus ENSMLUG000000106716 retrocopies
Mus musculus ENSMUSG000000711729 retrocopies
Oryctolagus cuniculus ENSOCUG000000066843 retrocopies
Otolemur garnettii ENSOGAG000000005026 retrocopies
Pan troglodytes ENSPTRG000000181064 retrocopies
Sus scrofa ENSSSCG000000015641 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000142805 retrocopies



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