RetrogeneDB ID: | retro_mmus_2933 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:52411452..52411936(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSMUSG00000071172 | ||
Aliases: | Srsf3, AL024116, Sfrs3, X16 | ||
Description: | serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285] |
Percent Identity: | 70.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MH.DS.PLDCK.YVGNLGNNGN..ELE..FGYYGPL.SVWVA.N..GFAF.EF.D..D..DAV....GR. | |
Retrocopy | MHHDS*PLDCKAYVGNLGNNGNMIELEWTFGYYGPLQSVWVA*NALGFAFIEF-DLQDTTDAVYKVGGRI |
Parental | LCGCRVRV-ELSNGEKR-SRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRER- |
LCGCRVRV.ELSNGEKR.S.N.GP.PSW...P..DY..RSPPPR.RSP..RS.S...SRSLSR.R.RER. | |
Retrocopy | LCGCRVRV<ELSNGEKR>SQNDGPRPSWDLSPPADYLKRSPPPRYRSP--RSVSQIQSRSLSRNRGRER> |
Parental | SLSRERNHKPSRSFSRSRSRSRSNERK |
SLS.ERNHKPS.SF.RSRS..RS.ERK | |
Retrocopy | SLSLERNHKPS*SFCRSRS*FRSDERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 70 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 64 .83 RPM |
SRP007412_heart | 0 .00 RPM | 53 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .23 RPM |
SRP007412_liver | 0 .00 RPM | 20 .86 RPM |
SRP007412_testis | 0 .00 RPM | 39 .61 RPM |