Parental gene: | SRSF3, ENSDNOG00000000421 |
| Aliases: | None |
| Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_1863:5956..11059(+) |
>ENSDNOG00000000421
ATGCATCGCGATTCTTGTCCCTTGGACTGTAAGGTTTATGTAGGTAATCTTGGAAACAATGGCAACAAGACTGAATTGGA
GCGGGCTTTTGGCTATTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCTTCCCGGCTTTGCTTTTGTNNNNNNNN
NNNNNNNNNNNNNTGCTGCTGATGCCGTCCGAGAACTAGATAAAACACTCTGTGGCTGCCGTGTAAGAGTGGAACTGTCG
AACGGTGAAAAAAGAAGTCGTAATCGAGGCCCTCCTCCCTCTTGGGGTCGTCGCCCTAGAGATGATTATCGTAGAAGGAG
TCCTCCGCCTCGCCGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTTTCTAGAGATAGGAGAA
GAGAAAGATCACTGTCTCGGGAAAGGAATCACAAGCCGTCCCGATCCTTCTCTAGATCTCGAAGCCGTTCTAGGTCAAAT
GAAAGGAAATAG
ATGCATCGCGATTCTTGTCCCTTGGACTGTAAGGTTTATGTAGGTAATCTTGGAAACAATGGCAACAAGACTGAATTGGA
GCGGGCTTTTGGCTATTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCTTCCCGGCTTTGCTTTTGTNNNNNNNN
NNNNNNNNNNNNNTGCTGCTGATGCCGTCCGAGAACTAGATAAAACACTCTGTGGCTGCCGTGTAAGAGTGGAACTGTCG
AACGGTGAAAAAAGAAGTCGTAATCGAGGCCCTCCTCCCTCTTGGGGTCGTCGCCCTAGAGATGATTATCGTAGAAGGAG
TCCTCCGCCTCGCCGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCTTTCTAGAGATAGGAGAA
GAGAAAGATCACTGTCTCGGGAAAGGAATCACAAGCCGTCCCGATCCTTCTCTAGATCTCGAAGCCGTTCTAGGTCAAAT
GAAAGGAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 82 .84 RPM |
| SRP012922_cerebellum | 33 .68 RPM |
| SRP012922_heart | 20 .65 RPM |
| SRP012922_kidney | 19 .44 RPM |
| SRP012922_liver | 28 .79 RPM |
| SRP012922_lung | 58 .49 RPM |
| SRP012922_quadricep_muscle | 11 .08 RPM |
| SRP012922_spleen | 74 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016062 | possible_ortholog | 5 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000007821 | within_species_paralog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000012598 | other_paralog | 2 retrogenes | |
| Equus caballus | ENSECAG00000018741 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000017186 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000018193 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010671 | possible_ortholog | 6 retrogenes | |
| Mus musculus | ENSMUSG00000071172 | possible_ortholog | 9 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006684 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000502 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000018106 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000001564 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014280 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_569 | 54.86 | 85.89 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_784 | 55.34 | 61.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1326 | 60.92 | 52.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_1513 | 71.95 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_1702 | 62.11 | 56.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_dnov_1951 | 62.87 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_dnov_2153 | 78.07 | 68.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_dnov_2328 | 59.79 | 58.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_dnov_2491 | 61.29 | 55.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000000421 retrocopies