RetrogeneDB ID: | retro_itri_901 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393340.1:2032997..2033491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSSTOG00000014280 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 86.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MH.DSCPLDCKVY.GNLGNNG.KTELE.AFGYYGPL..VWVARNPPGFAFVEFEDP.DAADAVRELDGRT | |
Retrocopy | MHPDSCPLDCKVYGGNLGNNGIKTELEQAFGYYGPL*RVWVARNPPGFAFVEFEDP*DAADAVRELDGRT |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRD-RR-RERS |
LCGC.VRVELSNGEKRSRNRGPPPSWGRRPR.DYRRRSPPPR.RSPRRR.FSRS.SRS.SRD.RR.RE.. | |
Retrocopy | LCGCHVRVELSNGEKRSRNRGPPPSWGRRPRGDYRRRSPPPRCRSPRRRRFSRSQSRSFSRDRRR<REIT |
Parental | LSRERNHKPSRSFSRSRSRSRSNERK |
.S.ER.HKPSRSFSRS.S.SRSNERK | |
Retrocopy | VSGERYHKPSRSFSRSCSQSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |