Parental gene:

ACTG1, ENSGGOG00000014043

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:5:1599094..1601920(+)


>ENSGGOG00000014043
ATGGAAGAAGAGATCGCCGCGCTGGTCATTGACAATGGCTCCGGCATGTGCAAAGCGGGTTTTGCTGGGGACGACGCTCC
CCGAGCCGTGTTTCCTTCCATCGTCGGGCGCCCCAGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCGTACG
TGGGCGACGAGGCCCAGAGCAAGCGTGGCATCCTGACCCTGAAGTACCCCATTGAGCACGGCATCGTCACCAACTGGGAC
GACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCGGAGGAGCACCCAGTGCTGCTGACCGA
GGCCCCCCTGAACCCCAAGGCCAACAGAGAGAAGATGACTCAGATTATGTTTGAGACCTTCAACACTCCGGCCATGTACG
TGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCTGGGCGTACCACTGGCATTGTCATGGACTCTGGAGACGGGGTCACC
CACACGGTGCCCATCTACGAGGGCTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGA
CTACCTCATGAAGATCCTCACCGAGCGAGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGCGACATCAAGG
AGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCATCCTCCTCTTCTCTGGAGAAGAGCTAC
GAGCTGCCCGATGGCCAGGTCATCACCATTGGCAACGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCCTTCCTTCCT
GGGCATGGAATCTTGCGGCATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGT
ACGCCAACACGGTGCTGTCGGGCGGCACCACCATGTACCCAGGCATTGCCGACAGGATGCAGAAGGAGATCACCGCCCTG
GCGCCCAGCACCATGAAGATCAAGATCATCGCACCCCCAGAGCGCAAGTACTCGGTGTGGATCGGCGGCTCCATCCTGGC
CTCACTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGACGAGTCGGGCCCCTCCATCGTCCACCGCAAAT
GCTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 672 .84 RPM
SRP007412_cerebellum 420 .65 RPM
SRP007412_heart 127 .52 RPM
SRP007412_kidney 875 .19 RPM
SRP007412_liver 477 .05 RPM
SRP007412_testis 698 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 ortholog_one2one 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Ailuropoda melanoleuca ENSAMEG00000016015 ortholog_one2one 1 retrogene
retro_amel_929,
Callithrix jacchus ENSCJAG00000002885 ortholog_one2one 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Cavia porcellus ENSCPOG00000012101 ortholog_one2one 1 retrogene
retro_cpor_361,
Equus caballus ENSECAG00000018600 ortholog_one2one 1 retrogene
retro_ecab_98,
Felis catus ENSFCAG00000026434 ortholog_one2one 2 retrogenes
retro_fcat_257, retro_fcat_377,
Homo sapiens ENSG00000184009 ortholog_one2one 10 retrogenes
retro_hsap_1548, retro_hsap_1607, retro_hsap_2405, retro_hsap_2591, retro_hsap_2605, retro_hsap_3466, retro_hsap_3631, retro_hsap_409, retro_hsap_4818, retro_hsap_4935,
Gallus gallus ENSGALG00000028749 ortholog_one2one 1 retrogene
retro_ggal_6,
Gorilla gorilla ENSGGOG00000001133 within_species_paralog 18 retrogenes
retro_ggor_1177, retro_ggor_1188, retro_ggor_1211, retro_ggor_1266, retro_ggor_1297, retro_ggor_1332, retro_ggor_1387, retro_ggor_1622, retro_ggor_1825, retro_ggor_1890, retro_ggor_2292, retro_ggor_2774, retro_ggor_2817, retro_ggor_3002, retro_ggor_352, retro_ggor_405, retro_ggor_44, retro_ggor_477,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Monodelphis domestica ENSMODG00000002647 ortholog_one2one 3 retrogenes
retro_mdom_187, retro_mdom_59, retro_mdom_89,
Mustela putorius furo ENSMPUG00000011610 ortholog_one2one 1 retrogene
retro_mputfur_279,
Mus musculus ENSMUSG00000062825 ortholog_one2one 7 retrogenes
retro_mmus_1043, retro_mmus_1524, retro_mmus_2383, retro_mmus_3128, retro_mmus_3265, retro_mmus_3607, retro_mmus_3705,
Nomascus leucogenys ENSNLEG00000015506 possible_ortholog 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Oryctolagus cuniculus ENSOCUG00000005867 possible_ortholog 1 retrogene
retro_ocun_720,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000008735 ortholog_one2one 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Pelodiscus sinensis ENSPSIG00000002102 ortholog_one2one 2 retrogenes
retro_psin_25, retro_psin_4,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Sorex araneus ENSSARG00000012197 possible_ortholog 1 retrogene
retro_sara_267,
Sus scrofa ENSSSCG00000028355 ortholog_one2one 1 retrogene
retro_sscr_389,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Tupaia belangeri ENSTBEG00000010781 possible_ortholog 1 retrogene
retro_tbel_422,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_273 76.26 67.47
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2. retro_ggor_413 84.85 52.00
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3. retro_ggor_520 77.93 58.67
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4. retro_ggor_1495 74.48 50.40
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5. retro_ggor_2338 82.32 100.00
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6. retro_ggor_2449 85.88 93.33
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Download FASTA sequences of all ENSGGOG00000014043 retrocopies