RetrogeneDB ID: | retro_itri_1091 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393374.1:1781243..1781642(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSSTOG00000013572 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 87.97 % |
Parental protein coverage: | 94.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | CTPALIRAGSRVAYRPISVSVLSRPETRPGKGSTVFNEAQNGERQLIRREFQTSVISRDIDTAAKFIGAG |
CTPALIRAGSR...RPISVSVLS.PETRPG.GSTVFN.AQNGE.QLIRREFQTS.IS.DIDTAAKFIG.G | |
Retrocopy | CTPALIRAGSRADSRPISVSVLS*PETRPGEGSTVFNGAQNGECQLIRREFQTSAISGDIDTAAKFIGSG |
Parental | AATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
AATVG.AGSGAGIGTVFGSLII.YARNPSLKQQ.FS.A.LGFALSEAMGLFCLMVAFLILFA. | |
Retrocopy | AATVGMAGSGAGIGTVFGSLIIRYARNPSLKQQRFS*ALLGFALSEAMGLFCLMVAFLILFAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |