RetrogeneDB ID: | retro_itri_1236 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393409.1:3785665..3785947(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSSTOG00000013572 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 58.16 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MFACAKLACT-PA-LIRAGSRVAYRPISVSVLSRPETRPGKGSTVFNE-AQNGERQLIRREFQTSVI-SR |
MF..AKLA.T.PA.L..AGSRVA.RPIS.SVL..P..R...G.TVF...A.NG..QLI.R.FQTS..... | |
Retrocopy | MFTSAKLAYT<PAPLL*AGSRVA*RPISASVLLPPQARTEEGLTVFDG<AHNGVCQLIQRQFQTSAT<HG |
Parental | DIDTAAKFIGAGAATVGVAGSGAGIGTV |
.I.TAAKF..AG.AT...A..G.GIGTV | |
Retrocopy | GINTAAKFMDAGDATIRAAICGLGIGTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |