RetrogeneDB ID: | retro_amel_1829 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194637.1:67486..67907(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSAMEG00000012367 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 61.11 % |
Parental protein coverage: | 94. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KMFACAKLACTPALIRAGSRVAYRPISASVL-SRPEARTGEGSTVFNGAQNGVSQLIQRE-FQTSAISRD |
K..ACA.....P...R..S.......S..VL...PE..T.E.......A.N....LI....F.TS.ISRD | |
Retrocopy | KLDACA*FVSAPFFVRSTSPLSSCSLSVVVL>NHPETLTDESLSSL-AATNPLTSLILNH>F*TSVISRD |
Parental | IDTAAKFIGAGAATVG-VAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFL |
..TAA.F.GAGAA.VG.VAGSGAGIGTVFGSLIIGY.RNPSL.QQLFSYAILG.AL.EAMGLFCLMVAF. | |
Retrocopy | VGTAAEFAGAGAARVG<VAGSGAGIGTVFGSLIIGYGRNPSLQQQLFSYAILGCALLEAMGLFCLMVAFI |
Parental | ILFA |
ILFA | |
Retrocopy | ILFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000619 | 18 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000012367 | 1 retrocopy |
retro_amel_1829 ,
|
Canis familiaris | ENSCAFG00000013366 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012592 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000008207 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000006194 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010440 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010768 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012822 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003954 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009520 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000013986 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012164 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027578 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001596 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006733 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013572 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000012159 | 1 retrocopy |