RetrogeneDB ID: | retro_cpor_479 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_165:1072994..1073327(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G3 | ||
Ensembl ID: | ENSCPOG00000006194 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 80.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | FACAKLACT-PALIRAGSRVAYRP-ISASVLSRPETRTGEGSLVFNGAQNGVCQLIRREFQTSAISRDID |
FA...L.CT.PALI.AG.RVAYR..ISASVL...E.RT.E.S..FNGAQ..VCQLIRREFQTSAISRDID | |
Retrocopy | FAHTNLTCT<PALIQAGARVAYRS<ISASVLPQLEARTRESSTAFNGAQSRVCQLIRREFQTSAISRDID |
Parental | TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARN-PSLKQQLFS |
TAA.FIG.GA....VAG.GAGI..V.GSL.I.YA...P.LKQ.LFS | |
Retrocopy | TAAQFIGPGATAIEVAGLGAGI-KVSGSLAIAYALH<PLLKQ*LFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 99 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 274 .39 RPM |
SRP017611_liver | 0 .00 RPM | 154 .61 RPM |
SRP040447_lung | 0 .00 RPM | 74 .12 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 369 .53 RPM |