RetrogeneDB ID: | retro_mmus_3667 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:95253469..95253770(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080298 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3b | ||
Ensembl ID: | ENSMUSG00000016559 | ||
Aliases: | H3f3b, 9430068D06Rik, H3.3B | ||
Description: | H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768] |
Percent Identity: | 83.17 % |
Parental protein coverage: | 73.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI-AQDFKTDLRFQS |
KQL.TKAARKSAPSTGG.KKP.RYRPGTVALR.I.RYQKSTELLI.KLP.QRLV.E..AQDFK.DL.FQS | |
Retrocopy | KQLPTKAARKSAPSTGGMKKPPRYRPGTVALRKI*RYQKSTELLIHKLPIQRLV*ER>AQDFKIDLHFQS |
Parental | AAIGALQEASEAYLVGLFEDTNLCAIHAKRV |
AA.GALQEAS..YLVGLFEDTNLCAIHAK.. | |
Retrocopy | AASGALQEASGVYLVGLFEDTNLCAIHAKQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 106 .82 RPM |
SRP007412_heart | 0 .00 RPM | 53 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .72 RPM |
SRP007412_liver | 0 .00 RPM | 69 .99 RPM |
SRP007412_testis | 0 .00 RPM | 201 .07 RPM |