RetrogeneDB ID: | retro_mmus_1269 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:45919089..45919428(-) | ||
Located in intron of: | ENSMUSG00000085866 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081840 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3b | ||
Ensembl ID: | ENSMUSG00000016559 | ||
Aliases: | H3f3b, 9430068D06Rik, H3.3B | ||
Description: | H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768] |
Percent Identity: | 79.13 % |
Parental protein coverage: | 83.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF-QRLVREIAQDFKTDLRFQSAAIGA |
KAA..SAPSTGGVKKPH...P.TVALRE.R.YQKSTELLIR.LPF.Q.L.REIAQDFKTDLRFQSAAIGA | |
Retrocopy | KAALRSAPSTGGVKKPHPSPPSTVALREVRHYQKSTELLIRELPF>QSLEREIAQDFKTDLRFQSAAIGA |
Parental | LQEASEAYLVGLFEDTNLCAI-HAKRVTIMPKDIQLARRIRGERA |
LQEASE..L.GLF.DTNL.AI...KRVTIMPKDIQLAR.I..E.A | |
Retrocopy | LQEASEGHLIGLFKDTNLGAI<PSKRVTIMPKDIQLARLIYQECA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 106 .82 RPM |
SRP007412_heart | 0 .03 RPM | 53 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .72 RPM |
SRP007412_liver | 0 .00 RPM | 69 .99 RPM |
SRP007412_testis | 0 .00 RPM | 201 .07 RPM |