RetrogeneDB ID: | retro_mmus_1635 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:36226814..36227194(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000092428 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3b | ||
Ensembl ID: | ENSMUSG00000016559 | ||
Aliases: | H3f3b, 9430068D06Rik, H3.3B | ||
Description: | H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768] |
Percent Identity: | 82.95 % |
Parental protein coverage: | 94.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVR-EIAQ |
RKS...K.P.......A..KSAPST.GVKKPHRYRPGTVAL.EIR.YQKSTELLIRKLPFQ.LV..EIAQ | |
Retrocopy | RKSQVVKHPGNNKSSQA-HKSAPSTRGVKKPHRYRPGTVALYEIRCYQKSTELLIRKLPFQCLVQ<EIAQ |
Parental | DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
DFKTDL.FQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV.IMPKDIQLA.RIRGERA | |
Retrocopy | DFKTDLSFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLAHRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 106 .82 RPM |
SRP007412_heart | 0 .03 RPM | 53 .36 RPM |
SRP007412_kidney | 0 .06 RPM | 84 .72 RPM |
SRP007412_liver | 0 .00 RPM | 69 .99 RPM |
SRP007412_testis | 0 .00 RPM | 201 .07 RPM |