Parental gene:

H3f3b, ENSMUSG00000016559

Aliases:H3f3b, 9430068D06Rik, H3.3B
Description:H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
Organism:Mouse (Mus musculus)
Coordinates:11:116021911..116027962(-)


>ENSMUSG00000016559
ATGGCCCGAACCAAGCAGACCGCTAGGAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACCAAGGCGGCTCG
GAAAAGCGCGCCCTCTACCGGCGGGGTGAAGAAGCCTCACCGCTACAGGCCAGGGACCGTGGCTCTGAGAGAGATCCGTC
GTTACCAGAAATCGACTGAGCTGCTCATCCGGAAGCTGCCATTCCAGAGATTGGTGAGGGAGATCGCCCAGGATTTCAAA
ACCGACTTGAGGTTTCAAAGTGCAGCCATCGGTGCCCTTCAGGAGGCTAGCGAAGCATACCTGGTGGGGTTGTTTGAAGA
TACCAATCTGTGTGCCATCCACGCCAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGG
AGAGAGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain 61 .33 RPM
SRP007412_cerebellum 106 .82 RPM
SRP007412_heart 53 .36 RPM
SRP007412_kidney 84 .72 RPM
SRP007412_liver 69 .99 RPM
SRP007412_testis 201 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Dipodomys ordii ENSDORG00000008132 ortholog_one2one 9 retrogenes
retro_dord_238, retro_dord_283, retro_dord_43, retro_dord_589, retro_dord_678, retro_dord_685, retro_dord_719, retro_dord_765, retro_dord_774,
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Gorilla gorilla ENSGGOG00000022526 ortholog_one2one 11 retrogenes
retro_ggor_1179, retro_ggor_1809, retro_ggor_1837, retro_ggor_1919, retro_ggor_2003, retro_ggor_2837, retro_ggor_2956, retro_ggor_3082, retro_ggor_393, retro_ggor_736, retro_ggor_944,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Mus musculus ENSMUSG00000060743 within_species_paralog 19 retrogenes
retro_mmus_1053, retro_mmus_1116, retro_mmus_1139, retro_mmus_1151, retro_mmus_1254, retro_mmus_2285, retro_mmus_2614, retro_mmus_2934, retro_mmus_3009, retro_mmus_3213, retro_mmus_3425, retro_mmus_395, retro_mmus_498, retro_mmus_808, retro_mmus_884, retro_mmus_885, retro_mmus_886, retro_mmus_959, retro_mmus_960,
Nomascus leucogenys ENSNLEG00000001577 ortholog_one2one 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 ortholog_one2one 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Pongo abelii ENSPPYG00000000168 ortholog_one2one 14 retrogenes
retro_pabe_1285, retro_pabe_2151, retro_pabe_2204, retro_pabe_2252, retro_pabe_2391, retro_pabe_2679, retro_pabe_2722, retro_pabe_2805, retro_pabe_2938, retro_pabe_3078, retro_pabe_323, retro_pabe_3420, retro_pabe_3637, retro_pabe_3697,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pteropus vampyrus ENSPVAG00000008459 ortholog_one2many 2 retrogenes
retro_pvam_218, retro_pvam_52,
Rattus norvegicus ENSRNOG00000003220 ortholog_one2one 4 retrogenes
retro_rnor_121, retro_rnor_191, retro_rnor_336, retro_rnor_44,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_896 91.24 100.00
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2. retro_mmus_961 88.24 100.00
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3. retro_mmus_962 87.50 100.00
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4. retro_mmus_1058 90.23 97.79
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5. retro_mmus_1188 68.15 97.06
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6. retro_mmus_1269 79.13 83.09
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7. retro_mmus_1535 97.79 100.00
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8. retro_mmus_1635 82.95 94.12
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9. retro_mmus_2021 91.24 100.00
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10. retro_mmus_2083 98.53 100.00
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11. retro_mmus_2377 97.06 100.00
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12. retro_mmus_2771 93.33 99.26
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13. retro_mmus_2867 92.65 100.00
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14. retro_mmus_2972 87.50 100.00
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15. retro_mmus_3002 88.32 100.00
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16. retro_mmus_3144 96.32 100.00
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17. retro_mmus_3477 68.03 88.97
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18. retro_mmus_3667 83.17 73.53
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Download FASTA sequences of all ENSMUSG00000016559 retrocopies