RetrogeneDB ID: | retro_pabe_2484 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:161915512..161915892(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPPYG00000003173 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R8J7] |
Percent Identity: | 82.81 % |
Parental protein coverage: | 69.4 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | QNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR |
QNYHQDSEAAIN.QINLE.Y.S.VYLSMSYYFDRDDVA..NFAKYFLHQSHEER.HA..LMKLQNQRG.. | |
Retrocopy | QNYHQDSEAAINCQINLEVYTS*VYLSMSYYFDRDDVA*NNFAKYFLHQSHEERAHAKELMKLQNQRGDQ |
Parental | -IFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFLETH |
.IFLQDIKKPDCDDWES.LN.MECA.HLEKN.N.SLLE.HKLATDKND.HLCD..ET. | |
Retrocopy | <IFLQDIKKPDCDDWESWLNEMECA*HLEKNMN*SLLEVHKLATDKNDLHLCDLMETN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 586 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 195 .78 RPM |
SRP007412_heart | 0 .00 RPM | 375 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 1135 .61 RPM |
SRP007412_liver | 0 .00 RPM | 1030 .76 RPM |