RetrogeneDB ID: | retro_pabe_2410 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3_random:11605378..11605699(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPPYG00000003173 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R8J7] |
Percent Identity: | 98.13 % |
Parental protein coverage: | 58.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKL |
MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQS.EEREHAEKL | |
Retrocopy | MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSDEEREHAEKL |
Parental | MKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHL |
MKLQNQRGGRIFLQDIKKPDCDDWES.LNAMECALHL | |
Retrocopy | MKLQNQRGGRIFLQDIKKPDCDDWESRLNAMECALHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 586 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 195 .78 RPM |
SRP007412_heart | 0 .00 RPM | 375 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 1135 .61 RPM |
SRP007412_liver | 0 .00 RPM | 1030 .76 RPM |