RetrogeneDB ID: | retro_pabe_3406 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:46733141..46733688(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPPYG00000003173 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R8J7] |
Percent Identity: | 85.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSY-YF-DRDDVALKNFAKYFLHQSHEEREHAE |
MTTA.T.QVRQNYHQ.SEA.INRQIN..LY.SYVYLS....Y..D.DDVALKNFAKYFLHQSHEE.EH.. | |
Retrocopy | MTTATTWQVRQNYHQNSEATINRQIN--LYTSYVYLSIHV>YYFDLDDVALKNFAKYFLHQSHEEKEHGD |
Parental | KLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFLETHY |
KLMKLQNQRGGRIFLQDIKKPDCDDWESGLNA.ECALHL...VNQSLLELHKLATDKNDPHLCDF..THY | |
Retrocopy | KLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAIECALHLXXXVNQSLLELHKLATDKNDPHLCDFIDTHY |
Parental | LNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
LNEQVKAIKELGDH.T.L.KMGAPESGLAEYLF.KHTLGDSDNES | |
Retrocopy | LNEQVKAIKELGDHMTKLCKMGAPESGLAEYLFEKHTLGDSDNES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 586 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 195 .78 RPM |
SRP007412_heart | 0 .06 RPM | 375 .63 RPM |
SRP007412_kidney | 0 .23 RPM | 1135 .61 RPM |
SRP007412_liver | 0 .12 RPM | 1030 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4232 |
Gorilla gorilla | retro_ggor_2835 |