RetrogeneDB ID: | retro_pabe_3351 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:84436188..84436737(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPPYG00000003173 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R8J7] |
Percent Identity: | 90.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSY-YFDRDDVALKNFAKYFLHQSHEEREHAEK |
M.TASTSQVRQNY.QDSEAAINRQINLEL.ASY.YLSMSY..FDRD.VALKNFAK.FL.QSHEEREHAEK | |
Retrocopy | MATASTSQVRQNYNQDSEAAINRQINLELCASYIYLSMSY<HFDRDNVALKNFAKCFLYQSHEEREHAEK |
Parental | LMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKN-VNQSLLELHKLATDKNDPHLCDFLETHY |
LMKLQNQ.GG.IFLQDIKKPDCDDWESGLNAMECALHL....VNQSLLELH.LATDKNDPHLC.F.ETHY | |
Retrocopy | LMKLQNQ*GGPIFLQDIKKPDCDDWESGLNAMECALHLXXX>VNQSLLELHRLATDKNDPHLCNFIETHY |
Parental | LNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
LNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES | |
Retrocopy | LNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 2 .43 RPM | 586 .52 RPM |
SRP007412_cerebellum | 0 .36 RPM | 195 .78 RPM |
SRP007412_heart | 1 .08 RPM | 375 .63 RPM |
SRP007412_kidney | 5 .30 RPM | 1135 .61 RPM |
SRP007412_liver | 5 .17 RPM | 1030 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4083 |