RetrogeneDB ID: | retro_pabe_3713 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:147984901..147985450(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSPPYG00000003173 | ||
Aliases: | None | ||
Description: | Ferritin heavy chain [Source:UniProtKB/Swiss-Prot;Acc:Q5R8J7] |
Percent Identity: | 97.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKL |
MT.ASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDV.LKNFAKYFLHQSHEEREHAEKL | |
Retrocopy | MTAASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVTLKNFAKYFLHQSHEEREHAEKL |
Parental | MKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFLETHYLN |
MKLQNQ.GGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDF.ETHYLN | |
Retrocopy | MKLQNQ*GGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLN |
Parental | EQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
EQVKAI.ELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES | |
Retrocopy | EQVKAIRELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSDNES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .28 RPM | 586 .52 RPM |
SRP007412_cerebellum | 0 .24 RPM | 195 .78 RPM |
SRP007412_heart | 0 .15 RPM | 375 .63 RPM |
SRP007412_kidney | 0 .66 RPM | 1135 .61 RPM |
SRP007412_liver | 0 .46 RPM | 1030 .76 RPM |