RetrogeneDB ID: | retro_pcap_266 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_24102:19868..20222(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSPCAG00000004787 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 95.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MA..KKGGEKK.G.SAI.EVVTREYTI.IH..IHGVGFKKRAPRALKEIRKFAMKE.GT.DV.IDTRLNK | |
Retrocopy | MAATKKGGEKK-GHSAITEVVTREYTISIHNHIHGVGFKKRAPRALKEIRKFAMKETGTLDVCIDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT |
AV.AKGIR.VPY.IR..LS.KRNE.EDSPNKLYTLVTY..VTTFKNLQ. | |
Retrocopy | AVRAKGIRDVPY*IRIQLSGKRNENEDSPNKLYTLVTYISVTTFKNLQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |