RetrogeneDB ID:

retro_ttru_67

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1105:25200..25527(-)
Located in intron of:ENSTTRG00000001565
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL31
Ensembl ID:ENSTTRG00000016447
Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]


Retrocopy-Parental alignment summary:






>retro_ttru_67
ATGGTTCCTGCAAAGAAGGGTGGTGAGACGAAGCGTCGATCTGCTCACCAACCAGGTCGTGACCAGGGAGTACACCACTA
ACATTCACAAGCACATCCCTGGAGTGGACTTCAAGTGTGTGCCCCTCAGGTACTCAAAGAGATCCAGAAATTGGCCAGCA
AGGAGATGGGAACTCCCGATGTGCTCATTGACACTATGCTTAACAAAGCTGTCTGGGCCAAAGATAGGAGGAATATCCCC
TACCATATCTGTGTGCAGTTGTCCAGAAAACATAATGATGATGAAGATTCACCAAACAAGCTCTATATGTTGGTTACCTA
TGTACCA

ORF - retro_ttru_67 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.21 %
Parental protein coverage: 88. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAPAKKGGEKKKGRSA-INEVVTREYTINIHKRIHGVGFK-KRAPRALKEIRKFAMKEMGTPDVRIDTRL
M.PAKKGGE.K..RSA..N.VVTREYT.NIHK.I.GV.FK...AP..LKEI.K.A.KEMGTPDV.IDT.L
RetrocopyMVPAKKGGETKR-RSA>TNQVVTREYTTNIHKHIPGVDFK<VCAPQVLKEIQKLASKEMGTPDVLIDTML
ParentalNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVP
NKAVWAK..RN.PY.I.V.LSRK.N.DEDSPNKLY.LVTYVP
RetrocopyNKAVWAKDRRNIPYHICVQLSRKHNDDEDSPNKLYMLVTYVP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_67 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_67 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 112 retrocopies.

Species Parental gene accession Retrocopies number
Dipodomys ordii ENSDORG000000157283 retrocopies
Felis catus ENSFCAG0000002643013 retrocopies
Latimeria chalumnae ENSLACG000000136031 retrocopy
Macropus eugenii ENSMEUG000000009638 retrocopies
Myotis lucifugus ENSMLUG0000000250721 retrocopies
Otolemur garnettii ENSOGAG0000001449410 retrocopies
Procavia capensis ENSPCAG0000000478710 retrocopies
Pongo abelii ENSPPYG000000258704 retrocopies
Rattus norvegicus ENSRNOG000000135088 retrocopies
Sus scrofa ENSSSCG000000081704 retrocopies
Sus scrofa ENSSSCG000000251806 retrocopies
Tursiops truncatus ENSTTRG00000016447 24 retrocopies



Copyright © RetrogeneDB 2014-2017