RetrogeneDB ID: | retro_fcat_148 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:25246538..25246865(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.78 % |
Parental protein coverage: | 87.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGV-GFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLN |
MAPAKKGGEKKKGRSAI.EV.T.EYTINIHKRI.G..GFKKRAPRALKEIRKFAMKEMGTPDV.IDT.LN | |
Retrocopy | MAPAKKGGEKKKGRSAISEVATSEYTINIHKRIRGG<GFKKRAPRALKEIRKFAMKEMGTPDVCIDTGLN |
Parental | KAVWAKGIRNVPYRIRVRLSR-KRNEDEDSPNKLYTLVTYV |
.AVWAKGIRN.P.RI.VR..R.KR..DEDSPNKL.TLVTYV | |
Retrocopy | EAVWAKGIRNIPHRIHVRSPR>KRDKDEDSPNKLCTLVTYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 57 .85 RPM |
SRP017611_kidney | 1 .03 RPM | 155 .41 RPM |
SRP017611_liver | 0 .71 RPM | 108 .77 RPM |