RetrogeneDB ID: | retro_fcat_881 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:5208109..5208479(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.39 % |
Parental protein coverage: | 98.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPA..GGEK....SAI.EV.TRE..I.IH..IHGV.FKKRAPR.LKEI..F...EM.TPDV..DTRLNK | |
Retrocopy | MAPA*QGGEKETRHSAITEVLTREHIISIHEHIHGVEFKKRAPRVLKEIQRFSRREMETPDVHMDTRLNK |
Parental | AVWAK-GIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD |
AVWAK.G.RNVP.RIRVR..RK.NEDEDSP..LYTLV.YVPVTTFKNLQT.NVD | |
Retrocopy | AVWAK>GVRNVPHRIRVR*ARKQNEDEDSPIQLYTLVAYVPVTTFKNLQTSNVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .41 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |