RetrogeneDB ID: | retro_fcat_17 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:8099269..8099635(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024727 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.73 % |
Parental protein coverage: | 94.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAP.K......KG.SAINEV.TREYTI.I.K.IHGVG.KKR.P..LKEI.KFAMKE.GTP.V..DTRLNK | |
Retrocopy | MAPTKN---INKGHSAINEVATREYTIHIQKHIHGVGCKKRDPQVLKEIWKFAMKETGTPVVPLDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQ |
.VW.KGIRNVPYR..V.LSRK.NEDE.SPNKLYTLVT.VPVTTFK.L. | |
Retrocopy | TVWVKGIRNVPYRVCVWLSRKCNEDEGSPNKLYTLVTFVPVTTFKTLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |