RetrogeneDB ID: | retro_rnor_286 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:21217975..21218374(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000039249 | |
Aliases: | Rpl31l4, Rpl31-ps8 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl31 | ||
Ensembl ID: | ENSRNOG00000013508 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:P62902] |
Percent Identity: | 98.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
MAPAKKGGEKKKG..AINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK | |
Retrocopy | MAPAKKGGEKKKGCFAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK |
Parental | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN | |
Retrocopy | AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 51 .91 RPM |
SRP017611_kidney | 0 .28 RPM | 51 .36 RPM |
SRP017611_liver | 0 .13 RPM | 40 .41 RPM |