RetrogeneDB ID: | retro_fcat_466 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:38219436..38219806(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026191 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026430 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYT-INIHKRIHGV-GFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL |
..P.KKGGEKK.G.SAI.EVVTREYT.INIHK.I.GV.GFKK.AP.ALK.I.KFAMKEMGTP..RIDT.. | |
Retrocopy | LGPIKKGGEKK-GCSAISEVVTREYT<INIHKCICGV<GFKKHAPWALKGIQKFAMKEMGTPGMRIDTSF |
Parental | NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
NK.VWAK.IRN.PY.I.V.LS.K.NEDEDS.NKLY.LVTYVPVTTF.NLQTVNVDEN | |
Retrocopy | NKTVWAKEIRNIPYHIHVQLSGKCNEDEDSSNKLYMLVTYVPVTTFENLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .41 RPM |
SRP017611_liver | 0 .00 RPM | 108 .77 RPM |