Parental gene:

Rpl31, ENSRNOG00000013508

Aliases:None
Description:60S ribosomal protein L31 [Source:UniProtKB/Swiss-Prot;Acc:P62902]
Organism:Rat (Rattus norvegicus)
Coordinates:9:45774872..45778902(+)


>ENSRNOG00000013508
ATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGTTCTGCCATCAACGAGGTGGTGACCCGAGAATACACCAT
CAACATTCACAAACGCATCCATGGAGTGGGCTTCAAGAAGCGTGCTCCTCGGGCACTCAAAGAAATTCGGAAATTTGCCA
TGAAGGAGATGGGAACTCCAGATGTGCGCATAGACACCAGGCTCAATAAAGCCGTCTGGGCCAAAGGAATAAGGAATGTT
CCGTACCGCATCCGAGTACGTTTGTCCAGAAAGCGTAATGAGGATGAGGATTCACCAAACAAGCTCTACACACTGGTAAC
TTACGTGCCTGTTACCACATTCAAAAATCTACAGACGGTCAATGTGGATGAGAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 51 .91 RPM
SRP017611_kidney 51 .36 RPM
SRP017611_liver 40 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007914 possible_ortholog 1 retrogene
retro_acar_168,
Dipodomys ordii ENSDORG00000015728 ortholog_one2one 3 retrogenes
retro_dord_164, retro_dord_515, retro_dord_770,
Felis catus ENSFCAG00000026430 ortholog_one2one 13 retrogenes
retro_fcat_1420, retro_fcat_148, retro_fcat_17, retro_fcat_190, retro_fcat_1957, retro_fcat_2003, retro_fcat_251, retro_fcat_46, retro_fcat_466, retro_fcat_658, retro_fcat_725, retro_fcat_803, retro_fcat_881,
Latimeria chalumnae ENSLACG00000013603 ortholog_one2many 1 retrogene
retro_lcha_94,
Macropus eugenii ENSMEUG00000000963 ortholog_one2many 8 retrogenes
retro_meug_1083, retro_meug_1433, retro_meug_1731, retro_meug_1741, retro_meug_198, retro_meug_418, retro_meug_588, retro_meug_649,
Myotis lucifugus ENSMLUG00000002507 possible_ortholog 21 retrogenes
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Monodelphis domestica ENSMODG00000001704 possible_ortholog 5 retrogenes
retro_mdom_1052, retro_mdom_1464, retro_mdom_1674, retro_mdom_1720, retro_mdom_1818,
Otolemur garnettii ENSOGAG00000014494 possible_ortholog 10 retrogenes
retro_ogar_103, retro_ogar_143, retro_ogar_150, retro_ogar_178, retro_ogar_181, retro_ogar_186, retro_ogar_262, retro_ogar_271, retro_ogar_29, retro_ogar_3,
Procavia capensis ENSPCAG00000004787 ortholog_one2one 10 retrogenes
retro_pcap_121, retro_pcap_125, retro_pcap_152, retro_pcap_228, retro_pcap_230, retro_pcap_266, retro_pcap_33, retro_pcap_378, retro_pcap_401, retro_pcap_413,
Pongo abelii ENSPPYG00000025870 possible_ortholog 4 retrogenes
retro_pabe_106, retro_pabe_1635, retro_pabe_168, retro_pabe_895,
Sarcophilus harrisii ENSSHAG00000011706 possible_ortholog 3 retrogenes
retro_shar_190, retro_shar_285, retro_shar_721,
Sus scrofa ENSSSCG00000008170 possible_ortholog 4 retrogenes
retro_sscr_1072, retro_sscr_1073, retro_sscr_128, retro_sscr_263,
Sus scrofa ENSSSCG00000025180 possible_ortholog 6 retrogenes
retro_sscr_20, retro_sscr_34, retro_sscr_469, retro_sscr_501, retro_sscr_713, retro_sscr_81,
Tursiops truncatus ENSTTRG00000016447 ortholog_one2one 24 retrogenes
retro_ttru_1054, retro_ttru_1072, retro_ttru_1102, retro_ttru_1470, retro_ttru_1717, retro_ttru_215, retro_ttru_230, retro_ttru_262, retro_ttru_281, retro_ttru_316, retro_ttru_40, retro_ttru_482, retro_ttru_507, retro_ttru_527, retro_ttru_67, retro_ttru_671, retro_ttru_690, retro_ttru_785, retro_ttru_80, retro_ttru_804, retro_ttru_842, retro_ttru_886, retro_ttru_896, retro_ttru_99,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_22 96.00 100.00
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2. retro_rnor_101 86.40 100.00
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3. retro_rnor_152 97.60 100.00
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4. retro_rnor_217 90.60 93.60
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5. retro_rnor_267 88.80 100.00
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6. retro_rnor_277 94.40 100.00
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7. retro_rnor_286 98.40 100.00
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8. retro_rnor_1809 85.87 72.80
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Download FASTA sequences of all ENSRNOG00000013508 retrocopies