RetrogeneDB ID: | retro_pvam_846 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_13439:4821..5312(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSPVAG00000000925 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 72.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGP-LGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQA |
M..KFDP.E.KV.YLRC..G.VGA.SALA.KIGP.LGLSPKKV..DIAKAT.DW.GLRITVKLTI.N.QA | |
Retrocopy | MRQKFDPSEFKVTYLRCKSGDVGAMSALATKIGP<LGLSPKKVCYDIAKATSDWNGLRITVKLTI*NTQA |
Parental | QIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSV |
QI....SASALII..LK.PP.DR.KQ.NI.HS.NITFD.IVNIA.QM.H.SLA.ELSGTI..ILGTA.S. | |
Retrocopy | QIDTT-SASALIIQVLKGPPKDRSKQTNINHSENITFDDIVNIAQQMWH*SLATELSGTIEKILGTA*SE |
Parental | GCNVDGRHPHDIIDDINSGAVECPAS |
G..VDG.H.HDII..INSGAVEC.AS | |
Retrocopy | GHTVDGCHSHDIIHAINSGAVECLAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |