RetrogeneDB ID: | retro_sscr_71 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:7480966..7481542(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000014809 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSSCG00000005612 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SARRRLRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGD |
SARR...C.FL..S.IR.HPTPAA.TMPPKFDP.EIKV.YLRCTGGE.GA.SALAPKIGP.GLSPKKVGD | |
Retrocopy | SARRWPGCGFLQLSQIRMHPTPAATTMPPKFDPKEIKVMYLRCTGGEGGAPSALAPKIGPPGLSPKKVGD |
Parental | DIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIAR |
DI.KATGDWKGLRITVKLTI.NRQAQ.EVVPS.SALIIKALKE.PRDRKKQKNIKHSGNITF.E.V.IAR | |
Retrocopy | DITKATGDWKGLRITVKLTIPNRQAQMEVVPSGSALIIKALKELPRDRKKQKNIKHSGNITFVETVSIAR |
Parental | QMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
QMRH.SLA.ELSGT.KEILGTAQSVGCNV.GRHPH.IIDDI..GAVECPAS | |
Retrocopy | QMRHHSLAGELSGTLKEILGTAQSVGCNVGGRHPHAIIDDIHRGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 238 .25 RPM |
SRP014902_testis | 0 .00 RPM | 576 .25 RPM |
SRP018288_heart | 0 .00 RPM | 184 .80 RPM |
SRP018288_kidney | 0 .00 RPM | 195 .24 RPM |
SRP018288_liver | 0 .00 RPM | 156 .39 RPM |
SRP018288_lung | 0 .00 RPM | 181 .56 RPM |
SRP018856_adipose | 0 .00 RPM | 390 .17 RPM |
SRP035408_brain | 0 .00 RPM | 261 .64 RPM |
SRP035408_liver | 0 .00 RPM | 168 .27 RPM |