RetrogeneDB ID: | retro_ggor_1449 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 19:43438568..43439147(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.46 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RLSARRRPRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKV |
.L.A.RRPRC.FLRSS.IRVH.TPAASTMP.KFDPN.IKV..LRCTGGEVGATSALAPKI..LGLSPKKV | |
Retrocopy | QLLAWRRPRCTFLRSSQIRVHLTPAASTMPLKFDPNKIKVICLRCTGGEVGATSALAPKISSLGLSPKKV |
Parental | GDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNI |
G.DI.KA.GDWKG.RITVKL.I.NRQA.IEV.PSASALIIKALKEPPRDRKKQKNIK.S.NITF.E...I | |
Retrocopy | GNDIDKAIGDWKGHRITVKLNIENRQAHIEVAPSASALIIKALKEPPRDRKKQKNIKRSRNITFHEVADI |
Parental | ARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
ARQMRH.SLAR.LSGTIKEI.GTAQSVGC.VDGRHPHDIIDDINSGAVECPAS | |
Retrocopy | ARQMRHQSLAR*LSGTIKEIQGTAQSVGCDVDGRHPHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .08 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .00 RPM | 168 .45 RPM |
SRP007412_testis | 0 .00 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2005 |