RetrogeneDB ID: | retro_ggor_1806 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:96714217..96714796(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.46 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RLSARRRPRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKV |
RL...RRPRCNFL.SS.IRVHP.PA.STM..KFDPN.IKVVYLRCTGGEV.ATSALAPKIGPLGLSPKK. | |
Retrocopy | RLLDWRRPRCNFLPSS*IRVHPSPATSTMLQKFDPNGIKVVYLRCTGGEVSATSALAPKIGPLGLSPKKI |
Parental | GDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNI |
GDDIAKA.GDWKGLRITVKLTIQNRQAQ.EVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEI.NI | |
Retrocopy | GDDIAKAMGDWKGLRITVKLTIQNRQAQTEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIINI |
Parental | ARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
A.QM...SL.RELSGTIKEIL.TAQSV..NVDG..PHDI.DDIN...VECP.S | |
Retrocopy | A*QMQQPSLPRELSGTIKEILETAQSVSHNVDGHQPHDITDDINNVVVECPTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .03 RPM | 168 .45 RPM |
SRP007412_testis | 0 .00 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2381 |