RetrogeneDB ID:

retro_ggor_1024

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:14:11929891..11930278(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL12
Ensembl ID:ENSGGOG00000000648
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1024
CTGTCTCCAAAAAAGGTTGGTGATGACATCACCAAGGCAACTAGTGACTGGAAGAGTCTGAGGATTACAATGAAACTGAC
CATTCAGAACAGACCAGCCCAGATTGAGGTGGTAACTTCTGCCTCTGTACTGACCATCAAAGGCCTCAAGGAACTGCCAA
GAGACTGAAAGAAACAGACGAACATTAAATACAGTGGAAATACCACTTTTGATGAGACTGTCAACACTGACAGATAGATA
TGGCATCGATCTTTAGCCTGAGAACTCTCCAGAACTGTTAACGAGATCCTGGGGACTGCCCAGTCTGTGGGCTGCAATGG
TGATGGCCACCACTCTCGGGACATCATAGATAACATCAACAGTGGGACAGTGGAATGCCCAACTAGT

ORF - retro_ggor_1024 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.97 %
Parental protein coverage: 66.15 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITF
LSPKKVGDDI.KAT.DWK.LRIT.KLTIQNR.AQIEVV.SAS.L.IK.LKE.PRD.KKQ.NIK.SGN.TF
RetrocopyLSPKKVGDDITKATSDWKSLRITMKLTIQNRPAQIEVVTSASVLTIKGLKELPRD*KKQTNIKYSGNTTF
ParentalDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
DE.VN..R...HRSLA.ELS.T..EILGTAQSVGCN.DG.H..DIID.INSG.VECP.S
RetrocopyDETVNTDR*IWHRSLA*ELSRTVNEILGTAQSVGCNGDGHHSRDIIDNINSGTVECPTS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 47 .14 RPM
SRP007412_cerebellum 0 .00 RPM 50 .82 RPM
SRP007412_heart 0 .00 RPM 35 .96 RPM
SRP007412_kidney 0 .00 RPM 164 .33 RPM
SRP007412_liver 0 .00 RPM 168 .45 RPM
SRP007412_testis 0 .10 RPM 81 .53 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1024 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1024 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1311
Pongo abelii retro_pabe_1095

Parental genes homology:
Parental genes homology involve 15 parental genes, and 271 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000069633 retrocopies
Callithrix jacchus ENSCJAG000000180821 retrocopy
Gorilla gorilla ENSGGOG00000000648 34 retrocopies
Latimeria chalumnae ENSLACG000000153733 retrocopies
Macropus eugenii ENSMEUG0000000738012 retrocopies
Macaca mulatta ENSMMUG000000004222 retrocopies
Monodelphis domestica ENSMODG000000045719 retrocopies
Mus musculus ENSMUSG000000389001 retrocopy
Otolemur garnettii ENSOGAG00000000597120 retrocopies
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Pongo abelii ENSPPYG0000001962244 retrocopies
Pan troglodytes ENSPTRG000000228081 retrocopy
Pteropus vampyrus ENSPVAG0000000092515 retrocopies
Rattus norvegicus ENSRNOG000000162204 retrocopies
Sarcophilus harrisii ENSSHAG000000178648 retrocopies
Sus scrofa ENSSSCG0000000561214 retrocopies



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