RetrogeneDB ID: | retro_pvam_100 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1368:204346..204624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSPVAG00000000925 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 59.6 % |
Parental protein coverage: | 59.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IQNRQAQIEVV-PSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEI |
IQNRQAQIE.V..SASAL.............K..N.KH..NITFDEIVNIA.......LARE.SGT.KEI | |
Retrocopy | IQNRQAQIEAV<TSASALDQQSHQRTAKRQNK*IN-KHRRNITFDEIVNIALTDAALILAREFSGTVKEI |
Parental | LGTAQSVGCNVDGRHPHDIIDDINSGAVE |
LGTAQ.VGC.VD..H.HDI....NSG.VE | |
Retrocopy | LGTAQFVGCSVDVHHSHDI----NSGVVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |