Parental gene:

RPL12, ENSGGOG00000000648

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:9:110970021..110973749(-)


>ENSGGOG00000000648
GCCTCTCGGCTTTCGGCTCGGAGGAGGCCAAGGTGCAACTTCCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGC
CGCCTCCACCATGCCGCCGAAGTTCGACCCCAACGAGATCAAAGTCGTATACCTGAGGTGCACCGGAGGTGAAGTCGGTG
CCACTTCTGCCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGGTTGGTGATGACATTGCCAAGGCAACG
GGTGACTGGAAGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGTGCCTTCTGC
CTCTGCCCTGATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAACATTAAACACAGTGGGAATA
TCACTTTTGATGAGATCGTCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGAACTCTCTGGAACCATTAAA
GAGATCCTGGGGACTGCCCAGTCTGTGGGCTGTAATGTTGATGGCCGCCACCCTCATGACATCATCGATGACATCAACAG
TGGTGCTGTGGAATGCCCAGCCAGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 47 .14 RPM
SRP007412_cerebellum 50 .82 RPM
SRP007412_heart 35 .96 RPM
SRP007412_kidney 164 .33 RPM
SRP007412_liver 168 .45 RPM
SRP007412_testis 81 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006963 ortholog_one2one 3 retrogenes
retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus ENSCJAG00000018082 possible_ortholog 1 retrogene
retro_cjac_221,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta ENSMMUG00000000422 possible_ortholog 2 retrogenes
retro_mmul_1823, retro_mmul_53,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus ENSMUSG00000038900 ortholog_one2many 1 retrogene
retro_mmus_28,
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Pongo abelii ENSPPYG00000019622 possible_ortholog 44 retrogenes
retro_pabe_1009, retro_pabe_1084, retro_pabe_1095, retro_pabe_1127, retro_pabe_1159, retro_pabe_1223, retro_pabe_1246, retro_pabe_1309, retro_pabe_1361, retro_pabe_1471, retro_pabe_1509, retro_pabe_1577, retro_pabe_1659, retro_pabe_1660, retro_pabe_1736, retro_pabe_1794, retro_pabe_1806, retro_pabe_1820, retro_pabe_1969, retro_pabe_1982, retro_pabe_2000, retro_pabe_2149, retro_pabe_2328, retro_pabe_2531, retro_pabe_2802, retro_pabe_2859, retro_pabe_2928, retro_pabe_2947, retro_pabe_3002, retro_pabe_3146, retro_pabe_3185, retro_pabe_3276, retro_pabe_3363, retro_pabe_3405, retro_pabe_3482, retro_pabe_3693, retro_pabe_488, retro_pabe_521, retro_pabe_604, retro_pabe_620, retro_pabe_757, retro_pabe_815, retro_pabe_831, retro_pabe_904,
Pan troglodytes ENSPTRG00000022808 ortholog_one2many 1 retrogene
retro_ptro_21,
Pteropus vampyrus ENSPVAG00000000925 ortholog_one2one 15 retrogenes
retro_pvam_100, retro_pvam_1026, retro_pvam_1193, retro_pvam_209, retro_pvam_239, retro_pvam_483, retro_pvam_572, retro_pvam_590, retro_pvam_617, retro_pvam_630, retro_pvam_687, retro_pvam_747, retro_pvam_787, retro_pvam_846, retro_pvam_888,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii ENSSHAG00000017864 possible_ortholog 8 retrogenes
retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,
Sus scrofa ENSSSCG00000005612 ortholog_one2one 14 retrogenes
retro_sscr_1111, retro_sscr_127, retro_sscr_189, retro_sscr_28, retro_sscr_439, retro_sscr_526, retro_sscr_551, retro_sscr_71, retro_sscr_715, retro_sscr_772, retro_sscr_773, retro_sscr_828, retro_sscr_832, retro_sscr_911,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_221 89.47 96.92
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2. retro_ggor_232 66.00 51.28
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3. retro_ggor_262 100.00 95.38
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4. retro_ggor_541 82.82 83.08
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5. retro_ggor_600 81.36 60.51
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6. retro_ggor_637 77.32 98.97
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7. retro_ggor_942 60.33 62.05
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8. retro_ggor_1024 75.97 66.15
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9. retro_ggor_1059 71.68 87.18
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10. retro_ggor_1086 94.80 88.72
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11. retro_ggor_1207 91.84 100.00
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12. retro_ggor_1242 64.12 85.13
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13. retro_ggor_1377 54.76 63.08
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14. retro_ggor_1389 64.58 95.38
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15. retro_ggor_1449 84.46 98.97
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16. retro_ggor_1511 80.00 98.46
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17. retro_ggor_1516 97.95 100.00
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18. retro_ggor_1530 94.33 99.49
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19. retro_ggor_1645 77.66 100.00
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20. retro_ggor_1740 93.33 100.00
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21. retro_ggor_1753 88.51 74.36
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22. retro_ggor_1806 84.46 98.97
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23. retro_ggor_1845 70.90 67.69
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24. retro_ggor_2158 91.19 98.46
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25. retro_ggor_2232 84.78 93.85
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26. retro_ggor_2293 87.86 71.28
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27. retro_ggor_2304 59.20 63.08
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28. retro_ggor_2334 89.06 98.46
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29. retro_ggor_2394 69.40 66.15
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30. retro_ggor_2414 93.30 99.49
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31. retro_ggor_2506 85.80 86.67
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32. retro_ggor_2758 57.76 59.49
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33. retro_ggor_2768 61.70 96.41
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34. retro_ggor_2949 74.49 97.44
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Download FASTA sequences of all ENSGGOG00000000648 retrocopies