RetrogeneDB - Parental gene ENSSSCG00000005612 details

                            
>ENSSSCG00000005612
TCGGCTCGGAGGAGGCTACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCCGCCTCCACCAT

GCCGCCTAAGTTCGACCCCAACGAGATCAAAGTCGTGTATCTGAGATGCACCGGTGGAGAAGTCGGGGCTACATCTGCCC

TGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGGTTGGTGATGACATTGCCAAGGCAACTGGTGATTGGAAG

GGTCTGAGAATTACAGTGAAACTGACCATTCAGAACAGACAAGCCCAGATCGAGGTGGTACCTTCTGCCTCTGCCCTGAT

CATCAAAGCTCTAAAGGAACCTCCAAGAGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAACATCACTTTTGATG

AGATTGTCAACATTGCCCGGCAGATGCGGCACCGCTCTTTAGCTAGAGAGCTTTCTGGAACCATTAAAGAGATCCTGGGG

ACTGCTCAGTCTGTGGGATGCAATGTTGATGGCCGCCACCCTCATGACATCATAGATGACATCAACAGTGGTGCAGTGGA

ATGCCCAGCTAGCTAA

Library	Parental gene expression (RPM)
SRP014902_placenta	238 .25 RPM
SRP014902_testis	576 .25 RPM
SRP018288_heart	184 .80 RPM
SRP018288_kidney	195 .24 RPM
SRP018288_liver	156 .39 RPM
SRP018288_lung	181 .56 RPM
SRP018856_adipose	390 .17 RPM
SRP035408_brain	261 .64 RPM
SRP035408_liver	168 .27 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000006963	ortholog_one2one	3 retrogenes	retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus	ENSCJAG00000018082	possible_ortholog	1 retrogene	retro_cjac_221,
Gorilla gorilla	ENSGGOG00000000648	ortholog_one2one	34 retrogenes	retro_ggor_1024, retro_ggor_1059, retro_ggor_1086, retro_ggor_1207, retro_ggor_1242, retro_ggor_1377, retro_ggor_1389, retro_ggor_1449, retro_ggor_1511, retro_ggor_1516, retro_ggor_1530, retro_ggor_1645, retro_ggor_1740, retro_ggor_1753, retro_ggor_1806, retro_ggor_1845, retro_ggor_2158, retro_ggor_221, retro_ggor_2232, retro_ggor_2293, retro_ggor_2304, retro_ggor_232, retro_ggor_2334, retro_ggor_2394, retro_ggor_2414, retro_ggor_2506, retro_ggor_262, retro_ggor_2758, retro_ggor_2768, retro_ggor_2949, retro_ggor_541, retro_ggor_600, retro_ggor_637, retro_ggor_942,
Latimeria chalumnae	ENSLACG00000015373	ortholog_one2many	3 retrogenes	retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii	ENSMEUG00000007380	possible_ortholog	12 retrogenes	retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta	ENSMMUG00000000422	possible_ortholog	2 retrogenes	retro_mmul_1823, retro_mmul_53,
Monodelphis domestica	ENSMODG00000004571	possible_ortholog	9 retrogenes	retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus	ENSMUSG00000038900	ortholog_one2many	1 retrogene	retro_mmus_28,
Otolemur garnettii	ENSOGAG00000000597	possible_ortholog	120 retrogenes	retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Pongo abelii	ENSPPYG00000019622	possible_ortholog	44 retrogenes	retro_pabe_1009, retro_pabe_1084, retro_pabe_1095, retro_pabe_1127, retro_pabe_1159, retro_pabe_1223, retro_pabe_1246, retro_pabe_1309, retro_pabe_1361, retro_pabe_1471, retro_pabe_1509, retro_pabe_1577, retro_pabe_1659, retro_pabe_1660, retro_pabe_1736, retro_pabe_1794, retro_pabe_1806, retro_pabe_1820, retro_pabe_1969, retro_pabe_1982, retro_pabe_2000, retro_pabe_2149, retro_pabe_2328, retro_pabe_2531, retro_pabe_2802, retro_pabe_2859, retro_pabe_2928, retro_pabe_2947, retro_pabe_3002, retro_pabe_3146, retro_pabe_3185, retro_pabe_3276, retro_pabe_3363, retro_pabe_3405, retro_pabe_3482, retro_pabe_3693, retro_pabe_488, retro_pabe_521, retro_pabe_604, retro_pabe_620, retro_pabe_757, retro_pabe_815, retro_pabe_831, retro_pabe_904,
Pan troglodytes	ENSPTRG00000022808	ortholog_one2many	1 retrogene	retro_ptro_21,
Pteropus vampyrus	ENSPVAG00000000925	ortholog_one2one	15 retrogenes	retro_pvam_100, retro_pvam_1026, retro_pvam_1193, retro_pvam_209, retro_pvam_239, retro_pvam_483, retro_pvam_572, retro_pvam_590, retro_pvam_617, retro_pvam_630, retro_pvam_687, retro_pvam_747, retro_pvam_787, retro_pvam_846, retro_pvam_888,
Rattus norvegicus	ENSRNOG00000016220	possible_ortholog	4 retrogenes	retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii	ENSSHAG00000017864	possible_ortholog	8 retrogenes	retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_sscr_28	86.91	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_sscr_71	84.82	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_sscr_127	87.43	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_sscr_189	67.68	50.26	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_sscr_439	68.63	52.36	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_sscr_526	69.11	63.87	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_sscr_551	69.11	63.87	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_sscr_715	82.67	77.49	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_sscr_772	82.98	97.91	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_sscr_773	56.67	61.26	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_sscr_828	75.68	58.12	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_sscr_832	57.30	93.72	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_sscr_911	89.52	64.40	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_sscr_1111	68.63	52.36	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSSSCG00000005612 retrocopies

Parental gene:	RPL12, ENSSSCG00000005612
Aliases:	None
Description:	None
Organism:	*Pig (Sus scrofa)*
Coordinates:	1:301871922..301875380(-)

Parental gene:

RPL12, ENSSSCG00000005612