RetrogeneDB ID: | retro_sscr_715 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:112157518..112157960(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000008506 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSSCG00000005612 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.67 % |
Parental protein coverage: | 77.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALK- |
.G.EV.ATSALAPKI.PLGLSPKKVGDDI.KATGDWK.LRIT.KLTI.NRQAQIEVVPSASALIIKALK. | |
Retrocopy | SGEEVSATSALAPKISPLGLSPKKVGDDITKATGDWKCLRITLKLTIRNRQAQIEVVPSASALIIKALK< |
Parental | EPPRDRKKQKNIKHSGNITFDEI-VNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDI |
E.P..RKKQKN.K.SGNITFDEI..NIA..M.H.SLARE.SGT.KEILGTAQSVGCNVDG.HPHDIIDDI | |
Retrocopy | ELPSNRKKQKNTKQSGNITFDEI<INIAQHMWH*SLAREFSGTVKEILGTAQSVGCNVDGCHPHDIIDDI |
Parental | NSGAVECPAS |
NS..VEC.AS | |
Retrocopy | NSSVVEC*AS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 238 .25 RPM |
SRP014902_testis | 0 .00 RPM | 576 .25 RPM |
SRP018288_heart | 0 .00 RPM | 184 .80 RPM |
SRP018288_kidney | 0 .00 RPM | 195 .24 RPM |
SRP018288_liver | 0 .00 RPM | 156 .39 RPM |
SRP018288_lung | 0 .00 RPM | 181 .56 RPM |
SRP018856_adipose | 0 .00 RPM | 390 .17 RPM |
SRP035408_brain | 0 .03 RPM | 261 .64 RPM |
SRP035408_liver | 0 .00 RPM | 168 .27 RPM |