RetrogeneDB ID: | retro_ggor_1242 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 16:48797582..48798073(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.12 % |
Parental protein coverage: | 85.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LSARRRPRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVG |
L.A.RRP.CNF..SS.I.V..T.AA.T..P.F.PNE.K..YLRCT.G.V.A.SALA.K..PLGLSP.KV. | |
Retrocopy | LLAQRRPKCNFIPSSHIWVYLTLAAPTIWPEFKPNETKAMYLRCTDGDVCAISALAAKVDPLGLSPEKVV |
Parental | DDI-AKATGDWK-GLRITVKLTIQN-RQAQIEVVPSASALIIKALKEP-PRDRKKQKNIKHSGNITFDEI |
....AKATGDW..G.RITV.LTIQN..Q.QI..VPSASALIIK.LKEP.P..RK.Q.NI..S..ITF.EI | |
Retrocopy | YTL<AKATGDWR<GIRITVELTIQN<QQSQIVIVPSASALIIKSLKEP<PK-RKRQENIECSVSITFYEI |
Parental | VNIARQMRHRSLARELSGTIKEILGTAQSV |
VN...QM.H.SLAREL.GT..EILG.A.SV | |
Retrocopy | VNSV*QMQHQSLARELFGTTREILGMASSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .00 RPM | 168 .45 RPM |
SRP007412_testis | 0 .00 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1644 |
Pongo abelii | retro_pabe_1361 |
Equus caballus | retro_ecab_708 |