RetrogeneDB ID: | retro_ggor_1377 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 18:35002220..35002592(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.76 % |
Parental protein coverage: | 63.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PKFDPNEIKVVYLRCT-GGEVGATSALAPKIGPLGLSPKKVGDDIA-KATGDWKGLRITVKLTIQNRQA- |
P.F.P.........CT.G..VG.............L..K.VGD.I..KAT.D..GL.ITV.LTIQNRQA. | |
Retrocopy | PPFCPRLTSTRL*ACT*GAPVGKLVSRLTLTSWIYLFSKTVGDNIT>KATSD*NGLSITVELTIQNRQA< |
Parental | QIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAREL |
QIEVV..A....IK..KEP.RDRKKQK.IKHS..ITFD.IV.IA.QM.H.SL.REL | |
Retrocopy | QIEVVLFAPVMMIKVPKEPVRDRKKQKSIKHSDSITFDDIVKIAQQMQHQSLIREL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .00 RPM | 168 .45 RPM |
SRP007412_testis | 0 .10 RPM | 81 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1880 |
Canis familiaris | retro_cfam_1880 |
Equus caballus | retro_ecab_973 |