RetrogeneDB ID: | retro_ggor_1740 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:91700112..91700697(+) | ||
Located in intron of: | ENSGGOG00000015453 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSGGOG00000000648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASRLSARRRPRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPK |
.SRLSARRRPR..FL.S..I.VHPTPAAS.MPPKFDPNEIKVVYLRCT.GEVGATSALAPKIGPLGLSPK | |
Retrocopy | SSRLSARRRPRRSFLPSFQIQVHPTPAASIMPPKFDPNEIKVVYLRCTRGEVGATSALAPKIGPLGLSPK |
Parental | KVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIV |
KVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRD.KKQKNIKHSGNITFDEI. | |
Retrocopy | KVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDGKKQKNIKHSGNITFDEII |
Parental | NIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
..ARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS | |
Retrocopy | KVARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 47 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 50 .82 RPM |
SRP007412_heart | 0 .00 RPM | 35 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 164 .33 RPM |
SRP007412_liver | 0 .00 RPM | 168 .45 RPM |
SRP007412_testis | 0 .10 RPM | 81 .53 RPM |